HalophFGD

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Basic Information
Locus ID: Chr01G011950
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: F-box-like
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000001 17448251 17449626 + Chr01G011950
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 40 73 4.1E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 36 74 3.4E-6 IPR036047
Gene3D G3DSA:1.20.1280.50 - 38 75 8.0E-7 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_052134655.1 uncharacterized protein LOC127753222 [Oryza glaberrima] 0
TrEMBL A0A5J9U166 F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_33487 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 31 AH01.2484, AH01.2722, AH02.158, AH02.159, AH05.199, AH08.382 ...
AH07.1620, AH08.1501, AH08.383, BH01.2829, BH01.2909, BH01.3055, BH04.289, BH04.292, BH04.295, BH07.4000, BH08.1480, BH08.388, BH08.389, BH08.391, BH08.392, CH01.3031, CH01.3110, CH01.3277, CH02.174, CH02.176, CH04.314, CH08.465, CH08.466, CH08.467, CH08.626
Poaceae Eleusine coracana subsp. coracana 19 gene-QOZ80_1AG0023930, gene-QOZ80_1BG0050170 ...
gene-QOZ80_1BG0050470, gene-QOZ80_1BG0088840, gene-QOZ80_2AG0111140, gene-QOZ80_2AG0111270, gene-QOZ80_2AG0118900, gene-QOZ80_2BG0164560, gene-QOZ80_2BG0172670, gene-QOZ80_3BG0266740, gene-QOZ80_5AG0403950, gene-QOZ80_5BG0428940, gene-QOZ80_5BG0452860, gene-QOZ80_6AG0524120, gene-QOZ80_8AG0618250, gene-QOZ80_8BG0645670, gene-QOZ80_8BG0645710, gene-QOZ80_9AG0679000, gene-QOZ80_9BG0702710
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.5HG0430290.1.CDS1 ...
HORVU.MOREX.r3.5HG0529170.1.CDS1, HORVU.MOREX.r3.7HG0651420.1.CDS1
Poaceae Lolium multiflorum 1 gene-QYE76_001051
Poaceae Oryza coarctata 6 Oco15G005160, Oco19G001460, Oco19G002160, Oco20G001180 ...
Oco20G002300, Oco23G004210
Poaceae Oryza sativa 9 LOC_Os01g54770.1, LOC_Os05g02700.1, LOC_Os05g36980.1 ...
LOC_Os10g01430.1, LOC_Os10g10420.1, LOC_Os10g12200.1, LOC_Os10g17930.1, LOC_Os10g17940.1, LOC_Os11g05460.1
Poaceae Paspalum vaginatum 10 gene-BS78_03G013300, gene-BS78_03G261400 ...
gene-BS78_05G050800, gene-BS78_06G133800, gene-BS78_07G051600, gene-BS78_07G051800, gene-BS78_07G051900, gene-BS78_08G089000, gene-BS78_08G089200, gene-BS78_09G031100
Poaceae Puccinellia tenuiflora 14 Pt_Chr0104514, Pt_Chr0108045, Pt_Chr0108046, Pt_Chr0108047 ...
Pt_Chr0108049, Pt_Chr0108050, Pt_Chr0108062, Pt_Chr0505745, Pt_Chr0600855, Pt_Chr0600858, Pt_Chr0601579, Pt_Chr0605889, Pt_Chr0605891, Pt_Chr0704516
Poaceae Sporobolus alterniflorus 8 Chr01G011950, Chr01G012230, Chr12G024420, Chr12G024710 ...
Chr19G013430, Chr20G008020, Chr20G011350, Chr29G011260
Poaceae Thinopyrum elongatum 2 Tel6E01G248200, Tel6E01G248800
Poaceae Triticum dicoccoides 1 gene_TRIDC5BG076130
Poaceae Triticum aestivum 14 TraesCS2A02G361300.1.cds1, TraesCS2A02G361800.1.cds1 ...
TraesCS3B02G435400.1.cds1, TraesCS3B02G570000.1.cds1, TraesCS3D02G511700.1.cds1, TraesCS4A02G363600.1.cds1, TraesCS5B02G509800.1.cds1, TraesCS5D02G509900.1.cds1, TraesCS6B02G141800.1.cds1, TraesCS6B02G141900.1.cds1, TraesCS6D02G102800.1.cds1, TraesCS6D02G102900.1.cds1, TraesCS6D02G103000.1.cds1, TraesCSU02G146700.1.cds1
Poaceae Zea mays 1 Zm00001eb250820_P001
Poaceae Zoysia japonica 14 nbis-gene-12116, nbis-gene-24318, nbis-gene-34021 ...
nbis-gene-34022, nbis-gene-41629, nbis-gene-41630, nbis-gene-41632, nbis-gene-41633, nbis-gene-41638, nbis-gene-43891, nbis-gene-43892, nbis-gene-58465, nbis-gene-58817, nbis-gene-59004
Poaceae Zoysia macrostachya 11 Zma_g15266, Zma_g15268, Zma_g15269, Zma_g15270, Zma_g15271 ...
Zma_g15272, Zma_g15273, Zma_g15274, Zma_g23644, Zma_g23645, Zma_g23646
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.