Basic Information
Locus ID:
Chr01G010100
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 13727052 | 13731590 | + | Chr01G010100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 118 | 6.8E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 464 | 3.9E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 6.04E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 17 | 120 | 1.9E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 488 | 84.290924 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.475402 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 563 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_025793575.1 | BTB/POZ domain-containing protein NPY4-like [Panicum hallii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WE30 | BTB/POZ domain-containing protein NPY4 OS=Eragrostis curvula OX=38414 GN=EJB05_05714 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology