Basic Information
Locus ID:
Chr01G009510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 11599508 | 11605885 | - | Chr01G009510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 64 | 387 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 67 | 329 | 5.7E-118 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 329 | 386 | 6.54E-17 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 65 | 328 | 4.43E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 94 | 387 | 1.3E-101 | IPR027417 |
| SMART | SM00382 | AAA_5 | 116 | 287 | 4.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 64 | 384 | 1.0E-142 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 95 | 253 | 28.17351 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 258 | 333 | 28.31838 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 272 | 280 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 358 | 375 | 1.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 304 | 333 | 1.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 152 | 181 | 1.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 186 | 215 | 1.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 224 | 253 | 1.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 269 | 297 | 1.3E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 65 | 390 | 44.854542 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_025797916.1 | DNA repair protein recA homolog 1, chloroplastic [Panicum hallii] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WDL2 | Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05497 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology