Basic Information
Locus ID:
Chr01G009470
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 11514661 | 11520925 | + | Chr01G009470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 26 | 95 | 1.1E-28 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 309 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 409 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 263 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 214 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 353 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 120 | 415 | 9.62E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 431 | 3.8E-154 | IPR015943 |
| SMART | SM00320 | WD40_4 | 370 | 410 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 263 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 353 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 309 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 214 | 0.0046 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 223 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 311 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 311 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 411 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 362 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 296 | 310 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 397 | 411 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 6.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58230.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1. | 0 |
| RefSeq | NP_001105556.1 | MSI type nucleosome/chromatin assembly factor C [Zea mays] | 0 |
| Q10G81 | Histone-binding protein MSI1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WCS1 | CAF1C_H4-bd domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_05478 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology