Basic Information
Locus ID:
Chr01G009320
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 11126371 | 11140659 | - | Chr01G009320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 155 | 207 | 4.96755E-29 | - |
| Pfam | PF12315 | Protein DA1 | 304 | 510 | 6.6E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 155 | 209 | 2.7E-7 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 147 | 180 | 3.57E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 182 | 236 | 1.92E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 149 | 228 | 1.0E-12 | - |
| SMART | SM00726 | uim | 46 | 65 | 26.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 154 | 206 | 3.7E-11 | IPR001781 |
| SMART | SM00726 | uim | 81 | 100 | 0.99 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 81 | 94 | 9.247869 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 153 | 213 | 11.8306 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 155 | 189 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 122 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039805873.1 | protein DA1-related 1-like [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7E269 | LIM zinc-binding domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G316100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology