Basic Information
Locus ID:
Chr01G007230
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 7678446 | 7684490 | - | Chr01G007230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 437 | 463 | 0.0017 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 476 | 502 | 6.2E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 430 | 5.2E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 473 | 504 | 1.26E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 389 | 8.63E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 401 | 432 | 5.57E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 433 | 464 | 3.1E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 504 | 537 | 5.7E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 470 | 503 | 4.3E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 356 | 392 | 3.1E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 398 | 432 | 1.1E-11 | - |
| SMART | SM00547 | zf_4 | 365 | 389 | 0.004 | IPR001876 |
| SMART | SM00547 | zf_4 | 404 | 428 | 2.7E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 509 | 533 | 0.009 | IPR001876 |
| SMART | SM00547 | zf_4 | 476 | 500 | 3.0E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 437 | 461 | 9.7E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 435 | 464 | 9.17907 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 474 | 503 | 9.834018 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 402 | 431 | 9.879186 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 363 | 392 | 8.659628 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 507 | 536 | 9.077439 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 439 | 458 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 511 | 530 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 478 | 497 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 406 | 425 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 367 | 386 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology