Basic Information
Locus ID:
Chr01G004900
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 4768378 | 4774042 | + | Chr01G004900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 785 | 1053 | 7.65767E-89 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 595 | 614 | 0.84 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 782 | 979 | 6.1E-43 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 76 | 1.3E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 470 | 681 | 5.31E-34 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 127 | 405 | 8.84E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 757 | 1050 | 2.29E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 156 | 1.3E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 856 | 1054 | 9.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 416 | 3.6E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 157 | 291 | 1.4E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 741 | 854 | 4.8E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 431 | 694 | 1.2E-45 | IPR032675 |
| SMART | SM00220 | serkin_6 | 779 | 1057 | 2.5E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 334 | 358 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 204 | 228 | 5.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 593 | 617 | 6.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 569 | 592 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 252 | 276 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 157 | 110.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 779 | 1053 | 38.661449 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 899 | 911 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 785 | 807 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 593 | 606 | 2.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 183 | 196 | 2.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_039782526.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Panicum virgatum] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0NC84 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG459184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology