Basic Information
Locus ID:
Chr01G000580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA polymerase subunit 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 624600 | 626953 | + | Chr01G000580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03870 | RNA polymerase Rpb8 | 8 | 136 | 7.6E-40 | IPR005570 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 3 | 136 | 3.77E-35 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 5 | 137 | 3.2E-43 | - |
| SMART | SM00658 | rpol8neu | 1 | 136 | 1.8E-43 | IPR005570 |
| PIRSF | PIRSF000779 | RPB8 | 1 | 137 | 1.7E-39 | IPR005570 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59600.1 | RNA polymerase Rpb8. One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast RPB8. Probably redundant with At1g54250. | 0 |
| RefSeq | XP_002466106.1 | DNA-directed RNA polymerases II, IV and V subunit 8B [Sorghum bicolor] | 0 |
| Q9M1A8 | DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1 | 0 | |
| TrEMBL | C5WSX7 | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Sorghum bicolor OX=4558 GN=SORBI_3001G013500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19054, jg26736 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10531 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004860 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g071190 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18060, Sbi_jg38069, Sbi_jg62686 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1291, Seu_jg15642 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014341 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl04206, Sgl23799, Sgl28965, Sgl53803, Sgl59070 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008877, gene:ENSEOMG00000030669 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0000310, CQ.Regalona.r1.4BG0000350 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30211050, pistato.v30211090, pistato.v30245800 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00368, Ag8G01232, Ag9G02255 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005390 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103699115, gene-LOC120109498 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1212.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22793, Ftri12G16834 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G54250.1, AT3G59600.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006298m.g.v1.0, Thhalv10029046m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g40680.v2.2, Sp5g03560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073910.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq06G1785, Ceq09G0969, Ceq09G0975, Ceq09G0999 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl06G1850, Cgl09G1061, Cgl09G1065, Cgl09G1087 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06780 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0037s00018.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1133 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.300 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001366, Pov_00022558, Pov_00029298, Pov_00031222 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23492, Lb5G26779 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.2833, BH06.2633 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0379410, gene-QOZ80_5BG0426440 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035564 |
| Poaceae | Oryza coarctata | 4 | Oco05G028780, Oco06G029820, Oco11G016130, Oco12G016420 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g62870.2, LOC_Os06g48230.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G274200, gene-BS78_10G249000, gene-BS78_K113000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401051, Pt_Chr0401090, Pt_Chr0401133 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000580, Chr10G021290, Chr11G001270, Chr12G032010 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G238800, Tel7E01G168800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG013300, gene_TRIDC2BG016240 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G110700.1, TraesCS2B02G129500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb210850_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40661, nbis-gene-9649 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31067, Zma_g33323 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.1117, evm.TU.LG18.1423, evm.TU.LG20.459 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1125, evm.TU.Scaffold_7_RagTag.1343 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15529, nbisL1-mrna-18416, nbisL1-mrna-20154 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13494, nbisL1-mrna-20199 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13304, nbisL1-mrna-971 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.283 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011798 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13582, nbisL1-mrna-9017 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4127 |
| Salicaceae | Populus euphratica | 3 | populus_peu16728, populus_peu16729, populus_peu37594 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132618750, gene-LOC132636672, gene-LOC132645136 |
| Solanaceae | Solanum chilense | 2 | SOLCI001011900, SOLCI001711700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009598, gene-LOC107012482 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4729_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2584 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20190.v3.1 |