Basic Information
Locus ID:
Chr01G000040
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000001 | 100666 | 106896 | - | Chr01G000040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 409 | 692 | 8.40047E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 440 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 482 | 5.6E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 548 | 630 | 2.6E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 490 | 525 | 0.0087 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 5.7E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 408 | 692 | 3.21E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 537 | 692 | 5.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 536 | 2.1E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 486 | 526 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 440 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 482 | 5.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 609 | 0.0057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 567 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 0.027 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0042 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 408 | 449 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.214383 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 660 | 692 | 11.365591 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 450 | 482 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 482 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 692 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 527 | 8.904377 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 321 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8K7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology