Basic Information
Locus ID:
CglSG0081
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold39 | 149744 | 158237 | + | CglSG0081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 50,215.87 Da | 32.45 | 68.85 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 289 | 363 | 2.50231E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 169 | 243 | 6.7678E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 240 | 2.3E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 356 | 4.9E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 281 | 372 | 5.02E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 58 | 246 | 2.23E-39 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 166 | 262 | 2.0E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 267 | 367 | 2.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 165 | 3.2E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 169 | 242 | 1.7E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 290 | 359 | 4.6 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 169 | 242 | 4.1E-4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 60 | 153 | 3.1E-11 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 290 | 359 | 2.8E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 363 | 16.227247 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 157 | 13.83949 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 168 | 246 | 17.131182 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_030947306.1 | oligouridylate-binding protein 1B-like [Quercus lobata] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1UVN9 | Oligouridylate-binding protein 1B OS=Morella rubra OX=262757 GN=CJ030_MR8G028152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology