Basic Information
Locus ID:
Cgl09G1821
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 23396672 | 23398866 | - | Cgl09G1821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 33,330.35 Da | 66.93 | 87.35 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 98 | 141 | 2.27325E-11 | - |
| CDD | cd16448 | RING-H2 | 228 | 271 | 7.03047E-11 | - |
| Pfam | PF13639 | Ring finger domain | 228 | 271 | 7.5E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 1.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 277 | 2.92E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 147 | 6.71E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 147 | 1.5E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 277 | 8.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 227 | 271 | 0.0092 | IPR011016 |
| SMART | SM00184 | ring_2 | 228 | 270 | 2.2E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 98 | 140 | 3.1E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 97 | 141 | 0.025 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 271 | 12.238477 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 98 | 141 | 12.40076 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030936768.1 | E3 ubiquitin-protein ligase RHA1B-like [Quercus lobata] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835D176 | RING-type domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_027367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology