Basic Information
Locus ID:
Cgl09G1497
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 20692383 | 20698353 | - | Cgl09G1497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 131,086.98 Da | 69.52 | 56.76 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 2.37924E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 742 | 871 | 2.5444E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 547 | 717 | 9.8E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 754 | 862 | 9.8E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 4.7E-7 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 594 | 879 | 1.01E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 4.79E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 498 | 732 | 3.0E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 733 | 903 | 5.7E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 59 | 1.5E-5 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 5.0E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 782 | 862 | 9.2E-35 | IPR001650 |
| SMART | SM00487 | ultradead3 | 542 | 745 | 7.6E-65 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.5066 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 523 | 551 | 11.704357 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 554 | 728 | 31.69762 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 757 | 901 | 25.427212 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 674 | 682 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1048 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1084 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1099 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 278 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_040990055.1 | DEAD-box ATP-dependent RNA helicase 46 [Juglans microcarpa x Juglans regia] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RDM2 | DEAD-box ATP-dependent RNA helicase 46 OS=Carpinus fangiana OX=176857 GN=FH972_015711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology