Basic Information
Locus ID:
Cgl09G1492
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 20661095 | 20664143 | + | Cgl09G1492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 50,693.70 Da | 51.58 | 78.38 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 111 | 423 | 1.4E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 74 | 456 | 1.73E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 65 | 454 | 2.7E-117 | IPR012334 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 294 | 307 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_018825778.2 | polygalacturonase At1g48100-like [Juglans regia] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RDV4 | Polygalacturonase At1g80170 OS=Carpinus fangiana OX=176857 GN=FH972_015700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology