Basic Information
Locus ID:
Cgl09G1491
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 20607913 | 20654320 | - | Cgl09G1491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 234,475.44 Da | 44.08 | 87.32 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 487 | 591 | 1.94819E-6 | - |
| Pfam | PF00168 | C2 domain | 485 | 593 | 4.1E-4 | IPR000008 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 743 | 848 | 9.6E-7 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 93 | 233 | 4.6E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1102 | 1397 | 2.7E-14 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 466 | 592 | 2.34E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 471 | 613 | 4.0E-6 | IPR035892 |
| SMART | SM00694 | dysfc | 813 | 853 | 0.0017 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 462 | 611 | 9.235708 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2063 | 2098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2072 | 2098 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.1 | calcium-dependent lipid-binding family protein. | 0 |
| RefSeq | XP_042990422.1 | uncharacterized protein LOC122317403 [Carya illinoinensis] | 0 |
| Q54LN2 | Intermembrane lipid transfer protein vps13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T1RNQ2 | C2 domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_01G132700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology