Basic Information
Locus ID:
Cgl09G1322
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 19175548 | 19180429 | - | Cgl09G1322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 46,006.14 Da | 47.73 | 92.83 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 213 | 260 | 2.65233E-14 | - |
| Pfam | PF12906 | RING-variant domain | 213 | 259 | 1.5E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 263 | 4.86E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 267 | 1.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 212 | 260 | 9.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 205 | 266 | 20.651714 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 69 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050240221.1 | uncharacterized protein LOC126689186 [Quercus robur] | 0 |
| TrEMBL | A0A7N2LVZ7 | RING-CH-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology