Basic Information
Locus ID:
Cgl09G1228
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 18440458 | 18448342 | - | Cgl09G1228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 149,221.16 Da | 53.26 | 88.86 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 1086 | 1117 | 6.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1057 | 1325 | 1.08E-24 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 554 | 984 | 4.26E-11 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 520 | 1010 | 7.0E-8 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1019 | 1327 | 4.3E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1079 | 1118 | 8.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1034 | 1074 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1161 | 1196 | 280.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1086 | 1118 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1086 | 1118 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1060 | 1083 | 9.238559 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 372 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06880.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_030973763.1 | putative E3 ubiquitin-protein ligase LIN-1 [Quercus lobata] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2LX77 | WD_REPEATS_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12412, jg28043, jg28044, jg28045 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234310 |
| Apiaceae | Apium graveolens | 1 | Ag1G01974 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G010180, COCNU_16G003580 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703612, gene-LOC103707236, gene-LOC120110213 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.955.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G25308, Ftri7G30923 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G06880.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019914m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g05840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g024330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1131 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1228 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17370 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g31080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1296 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026116 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2746, BH05.2867, CH09.2684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0376180, gene-QOZ80_5BG0423400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0060600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_013817, gene-QYE76_013818 |
| Poaceae | Oryza coarctata | 2 | Oco09G007630, Oco10G007870 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g30010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G118200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503579, Pt_Chr0505358 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G021970, Chr12G015950, Chr18G007060, Chr19G016490 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G385600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG034700, gene_TRIDC1BG040070 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G230200.1.cds1, TraesCS1A02G230300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb285640_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38787, nbis-gene-38788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28115 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.587 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1378 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6297 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.858 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012702 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12196 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18189 |
| Salicaceae | Populus euphratica | 1 | populus_peu08060 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626786 |
| Solanaceae | Solanum chilense | 1 | SOLCI007170600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006707 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28250.v3.1 |