Basic Information
Locus ID:
Cgl09G1192
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 18062158 | 18063799 | - | Cgl09G1192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 29,250.00 Da | 33.27 | 78.12 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 3 | 35 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 3 | 246 | 3.79E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 259 | 5.0E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 72 | 1.8E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 8.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 247 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 188 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 36 | 9.03805 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 22 | 36 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_028102709.1 | topless-related protein 3-like [Camellia sinensis] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6RCR5 | Topless-related protein 2 OS=Carpinus fangiana OX=176857 GN=FH972_015450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11623 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020459, gene:ENSEOMG00000023519 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30099700, pistato.v30131470, pistato.v30239300 ... |
| Apiaceae | Apium graveolens | 4 | Ag1G00504, Ag4G00115, Ag8G00391, Ag9G01177 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1192 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G011540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G349600, Tel7E01G139800 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1074 |
| Rhizophoraceae | Rhizophora apiculata | 7 | nbisL1-mrna-12322, nbisL1-mrna-17438, nbisL1-mrna-17859 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17231, nbisL1-mrna-23337, nbisL1-mrna-24305 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu33348 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006615 |