Basic Information
Locus ID:
Cgl09G1163
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 17825959 | 17832724 | + | Cgl09G1163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 56,057.56 Da | 49.62 | 84.35 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 322 | 499 | 6.66984E-116 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 321 | 428 | 2.6E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 4 | 69 | 1.8E-10 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 324 | 454 | 3.92E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 308 | 499 | 1.8E-73 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 102 | 1.4E-25 | - |
| SMART | SM00232 | pad1_6 | 324 | 452 | 5.8E-15 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 325 | 455 | 30.104366 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 321 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_050239844.1 | AMSH-like ubiquitin thioesterase 3 [Quercus robur] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7N2LV65 | MPN domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology