Basic Information
Locus ID:
Cgl09G1103
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 17249584 | 17254909 | + | Cgl09G1103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 61,496.35 Da | 45.92 | 90.59 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 88 | 197 | 3.82096E-21 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 123 | 183 | 2.0E-4 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 61 | 382 | 1.1E-51 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 56 | 237 | 4.91E-34 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 387 | 497 | 3.92E-20 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 241 | 382 | 1.07E-46 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 61 | 380 | 2.3E-97 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 385 | 492 | 4.3E-12 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 81 | 234 | 2.3E-97 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 57 | 531 | 4.4E-136 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 542 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06560.1 | poly(A) polymerase 3. Encodes a poly(A) polymerase. Located in the cytoplasm. | 0 |
| RefSeq | XP_018847238.1 | nuclear poly(A) polymerase 3 [Juglans regia] | 0 |
| Q56XM9 | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=PAPS3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RE47 | polynucleotide adenylyltransferase OS=Carpinus fangiana OX=176857 GN=FH972_015282 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology