halophFGD

Basic Information

Locus ID: Cgl09G1008

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: Transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr09	16192365	16199850	+	Cgl09G1008

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.86	75,164.02 Da	38.20	112.08	0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01398	RPI_A	463	683	6.35226E-103	IPR004788
Pfam	PF03547	Membrane transport protein	23	417	4.3E-83	IPR004776
Pfam	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)	509	684	1.3E-60	IPR004788
SUPERFAMILY	SSF100950	NagB/RpiA/CoA transferase-like	459	608	2.02E-40	IPR037171
SUPERFAMILY	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain	592	673	7.06E-19	-
Gene3D	G3DSA:3.40.50.1360	-	463	684	2.7E-79	-
Gene3D	G3DSA:3.30.70.260	-	586	670	2.7E-79	-
TIGRFAM	TIGR00021	rpiA: ribose 5-phosphate isomerase A	463	686	5.0E-79	IPR004788
Hamap	MF_00170	Ribose-5-phosphate isomerase A [rpiA].	460	690	30.206039	IPR020672

Gene Ontology

Biological Process:

GO:0009052 (pentose-phosphate shunt, non-oxidative branch) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0004751 (ribose-5-phosphate isomerase activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G71090.1	Auxin efflux carrier family protein.
RefSeq	XP_041015240.1	protein PIN-LIKES 2-like [Juglans microcarpa x Juglans regia]
Swiss-Prot	Q9C999	Protein PIN-LIKES 2 OS=Arabidopsis thaliana OX=3702 GN=PILS2 PE=2 SV=1
TrEMBL	A0A498IB73	ribose-5-phosphate isomerase OS=Malus domestica OX=3750 GN=DVH24_040372 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg17248, jg19933, jg22540, jg22542, jg30810, jg30938, jg3138 ... jg39840
Aizoaceae	Mesembryanthemum crystallinum	10	gene_13356, gene_13357, gene_13358, gene_14612, gene_16637 ... gene_18557, gene_8238, gene_8239, gene_8240, gene_8616
Amaranthaceae	Atriplex hortensis	13	Ah025395, Ah026811, Ah026812, Ah026813, Ah026814, Ah026815 ... Ah026816, Ah026817, Ah027257, Ah027275, Ah031586, Ah034385, Ah035830
Amaranthaceae	Beta vulgaris	10	BVRB_2g027460, BVRB_2g040480, BVRB_4g078140, BVRB_6g130130 ... BVRB_6g134290, BVRB_6g135980, BVRB_6g139620, BVRB_6g139630, BVRB_6g142780, BVRB_7g156570
Amaranthaceae	Salicornia bigelovii	18	Sbi_jg12628, Sbi_jg12648, Sbi_jg12649, Sbi_jg12904 ... Sbi_jg13766, Sbi_jg13767, Sbi_jg2098, Sbi_jg2100, Sbi_jg21947, Sbi_jg29593, Sbi_jg34413, Sbi_jg34415, Sbi_jg52148, Sbi_jg52149, Sbi_jg52964, Sbi_jg53285, Sbi_jg53308, Sbi_jg53309
Amaranthaceae	Salicornia europaea	11	Seu_jg15800, Seu_jg2669, Seu_jg28221, Seu_jg28227 ... Seu_jg28228, Seu_jg8613, Seu_jg8633, Seu_jg8892, Seu_jg9689, Seu_jg9690, Seu_jg9691
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00005824, GOSA_00008441, GOSA_00010384, GOSA_00010402 ... GOSA_00013030, GOSA_00016756, GOSA_00017507, GOSA_00023637
Amaranthaceae	Suaeda glauca	22	Sgl32931, Sgl33294, Sgl33295, Sgl33296, Sgl33612, Sgl33613 ... Sgl33634, Sgl38195, Sgl38569, Sgl38570, Sgl38571, Sgl38573, Sgl38683, Sgl38684, Sgl38685, Sgl38919, Sgl38920, Sgl38945, Sgl62197, Sgl66759, Sgl71159, Sgl74741
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000000067, gene:ENSEOMG00000002457 ... gene:ENSEOMG00000002752, gene:ENSEOMG00000003391, gene:ENSEOMG00000003579, gene:ENSEOMG00000003623, gene:ENSEOMG00000004041, gene:ENSEOMG00000007471, gene:ENSEOMG00000016634, gene:ENSEOMG00000017393, gene:ENSEOMG00000020063, gene:ENSEOMG00000026446, gene:ENSEOMG00000027141, gene:ENSEOMG00000027276, gene:ENSEOMG00000027515, gene:ENSEOMG00000028880, gene:ENSEOMG00000034793, gene:ENSEOMG00000035796, gene:ENSEOMG00000040523, gene:ENSEOMG00000046908
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0015770, CQ.Regalona.r1.1AG0023350 ... CQ.Regalona.r1.1BG0000910, CQ.Regalona.r1.1BG0000920, CQ.Regalona.r1.2BG0020380, CQ.Regalona.r1.6AG0012660, CQ.Regalona.r1.6AG0013000, CQ.Regalona.r1.6AG0019670, CQ.Regalona.r1.6AG0019690, CQ.Regalona.r1.6AG0023480, CQ.Regalona.r1.6AG0023670, CQ.Regalona.r1.6AG0023680, CQ.Regalona.r1.6BG0013300, CQ.Regalona.r1.6BG0020740, CQ.Regalona.r1.6BG0020750, CQ.Regalona.r1.6BG0020760, CQ.Regalona.r1.6BG0020770, CQ.Regalona.r1.6BG0020780, CQ.Regalona.r1.6BG0020790, CQ.Regalona.r1.6BG0020800, CQ.Regalona.r1.6BG0025020, CQ.Regalona.r1.7AG0023430, CQ.Regalona.r1.7BG0026110
Anacardiaceae	Pistacia vera	5	pistato.v30047860, pistato.v30190930, pistato.v30212330 ... pistato.v30216350, pistato.v30269640
Apiaceae	Apium graveolens	9	Ag11G03453, Ag1G01917, Ag2G02937, Ag2G02938, Ag3G01767 ... Ag3G02590, Ag3G02591, Ag4G01308, Ag5G02829
Arecaceae	Cocos nucifera	8	COCNU_01G007900, COCNU_04G004890, COCNU_04G012480 ... COCNU_07G014000, COCNU_08G004710, COCNU_09G005750, COCNU_12G006030, scaffold018320G000010
Arecaceae	Phoenix dactylifera	13	gene-LOC103702170, gene-LOC103704931, gene-LOC103705173 ... gene-LOC103709705, gene-LOC103716701, gene-LOC103717732, gene-LOC103718434, gene-LOC120103978, gene-LOC120110124, gene-LOC120110298, gene-LOC120111311, gene-LOC120111508, gene-LOC120112719
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.2882.V1.1, AsparagusV1_04.3486.V1.1 ... AsparagusV1_04.423.V1.1, AsparagusV1_04.424.V1.1, AsparagusV1_05.1475.V1.1, AsparagusV1_06.685.V1.1, AsparagusV1_07.2403.V1.1, AsparagusV1_07.755.V1.1
Asteraceae	Flaveria trinervia	10	Ftri10G04108, Ftri13G05186, Ftri17G15265, Ftri17G15927 ... Ftri17G17967, Ftri17G27930, Ftri18G12607, Ftri1G24494, Ftri6G04044, FtriNA32480
Brassicaceae	Arabidopsis thaliana	7	AT1G20925.1, AT1G71090.1, AT1G76520.1, AT1G76530.1 ... AT2G17500.1, AT5G01990.1, AT5G65980.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10005581m.g.v1.0, Thhalv10009415m.g.v1.0 ... Thhalv10009963m.g.v1.0, Thhalv10013614m.g.v1.0, Thhalv10018516m.g.v1.0, Thhalv10018685m.g.v1.0, Thhalv10022717m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g18630.v2.2, Sp1g38050.v2.2, Sp2g30710.v2.2 ... Sp3g30850.v2.2, Sp5g26260.v2.2, Sp5g31680.v2.2, Sp5g31690.v2.2
Brassicaceae	Brassica nigra	11	BniB03g048990.2N, BniB03g055550.2N, BniB03g065480.2N ... BniB04g000020.2N, BniB04g026250.2N, BniB04g035650.2N, BniB05g073120.2N, BniB06g029440.2N, BniB06g049160.2N, BniB07g004640.2N, BniB07g044660.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq06G0031, Ceq07G0285, Ceq08G0678, Ceq08G0854, Ceq09G0929
Casuarinaceae	Casuarina glauca	8	Cgl03G1552, Cgl06G0016, Cgl06G0018, Cgl06G0032, Cgl07G0269 ... Cgl08G0657, Cgl08G0872, Cgl09G1008
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g14250, gene.Cymno04g11890, gene.Cymno09g00140
Dunaliellaceae	Dunaliella salina	1	Dusal.0136s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g23730, gene.Thate06g06250, gene.Thate07g01520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	13	nbisL1-mrna-10411, nbisL1-mrna-11941, nbisL1-mrna-1908 ... nbisL1-mrna-1909, nbisL1-mrna-1910, nbisL1-mrna-1911, nbisL1-mrna-4867, nbisL1-mrna-4868, nbisL1-mrna-5357, nbisL1-mrna-6541, nbisL1-mrna-6924, nbisL1-mrna-8442, nbisL1-mrna-9926
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.825, evm.TU.LG02.2894, evm.TU.LG03.1456 ... evm.TU.LG06.23
Plantaginaceae	Plantago ovata	10	Pov_00007000, Pov_00013869, Pov_00020323, Pov_00020338 ... Pov_00020343, Pov_00022304, Pov_00022305, Pov_00023177, Pov_00028955, Pov_00037620
Plumbaginaceae	Limonium bicolor	4	Lb0G37005, Lb1G06068, Lb2G09497, Lb4G25616
Poaceae	Echinochloa crus-galli	16	AH01.5174, AH02.3673, AH02.3675, AH03.2418, AH03.2870 ... AH03.839, BH01.5036, BH02.3258, BH03.2551, BH03.3039, BH03.968, CH01.5638, CH02.3964, CH03.1133, CH03.2753, CH03.3226
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0037820, gene-QOZ80_1BG0087840 ... gene-QOZ80_2AG0137060, gene-QOZ80_2BG0192670, gene-QOZ80_3AG0232260, gene-QOZ80_6AG0526560, gene-QOZ80_6AG0539790, gene-QOZ80_6BG0480490, gene-QOZ80_6BG0493170, gene-QOZ80_7AG0563230
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.3HG0297140.1, HORVU.MOREX.r3.4HG0379200.1 ... HORVU.MOREX.r3.3HG0327810.1.CDS1, HORVU.MOREX.r3.5HG0491050.1, HORVU.MOREX.r3.5HG0504260.2, HORVU.MOREX.r3.6HG0633840.1
Poaceae	Lolium multiflorum	10	gene-QYE76_006188, gene-QYE76_006190, gene-QYE76_006191 ... gene-QYE76_006193, gene-QYE76_006444, gene-QYE76_007091, gene-QYE76_055730, gene-QYE76_059111, gene-QYE76_068133, gene-QYE76_071184
Poaceae	Oryza coarctata	10	Oco01G023270, Oco02G024040, Oco09G012460, Oco10G012540 ... Oco15G003650, Oco16G003570, Oco17G008050, Oco18G008270, Oco18G011370, Oco18G011380
Poaceae	Oryza sativa	6	LOC_Os01g60230.3, LOC_Os05g40330.1, LOC_Os08g09190.1 ... LOC_Os09g31478.1, LOC_Os09g38130.1, LOC_Os09g38210.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G495100, gene-BS78_02G225500 ... gene-BS78_02G225600, gene-BS78_02G225700, gene-BS78_02G268200, gene-BS78_03G316600, gene-BS78_04G192000
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0100511, Pt_Chr0501135, Pt_Chr0601079, Pt_Chr0601086 ... Pt_Chr0601798, Pt_Chr0601980, Pt_Chr0700762, Pt_Chr0700870, Pt_Chr0701469, Pt_Chr0701482, Pt_Chr0701578, Pt_Chr0701602, Pt_Chr0701647, Pt_Chr0701679
Poaceae	Sporobolus alterniflorus	9	Chr02G006370, Chr03G018750, Chr05G027010, Chr08G023170 ... Chr09G011990, Chr11G012790, Chr13G007870, Chr14G009210, Chr21G009410
Poaceae	Thinopyrum elongatum	7	Tel3E01G545700, Tel3E01G882300, Tel4E01G311400 ... Tel4E01G531400, Tel5E01G045600, Tel5E01G428300, Tel5E01G567300
Poaceae	Triticum dicoccoides	13	gene_TRIDC3AG049250, gene_TRIDC3AG074250 ... gene_TRIDC3BG055480, gene_TRIDC3BG085590, gene_TRIDC4AG018450, gene_TRIDC4BG031250, gene_TRIDC4BG054310, gene_TRIDC5AG040550, gene_TRIDC5AG070420, gene_TRIDC5BG044310, gene_TRIDC5BG056060, gene_TRIDC6AG061510, gene_TRIDC6BG068610
Poaceae	Triticum aestivum	22	TraesCS3A02G341400.1, TraesCS3A02G525200.1.cds1 ... TraesCS3B02G373500.1, TraesCS3B02G592500.1.cds1, TraesCS3D02G335100.1, TraesCS3D02G530400.1.cds1, TraesCS4A02G132600.1, TraesCS4B02G172100.1, TraesCS4B02G322800.1, TraesCS4D02G174100.2, TraesCS4D02G319200.1, TraesCS5A02G267300.1, TraesCS5A02G354300.1, TraesCS5A02G494900.1, TraesCS5B02G267800.2, TraesCS5B02G356700.1, TraesCS5D02G275200.1, TraesCS5D02G361500.1, TraesCS5D02G361600.2, TraesCS6A02G421200.1, TraesCS6B02G466900.1, TraesCS6D02G404400.1
Poaceae	Zea mays	9	Zm00001eb114230_P001, Zm00001eb126590_P001 ... Zm00001eb149720_P001, Zm00001eb184320_P001, Zm00001eb312840_P001, Zm00001eb316860_P001, Zm00001eb320680_P002, Zm00001eb418080_P001, Zm00001eb422020_P001
Poaceae	Zoysia japonica	11	nbis-gene-10436, nbis-gene-11594, nbis-gene-18574 ... nbis-gene-19472, nbis-gene-29692, nbis-gene-31435, nbis-gene-31938, nbis-gene-49169, nbis-gene-49806, nbis-gene-51602, nbis-gene-52791
Poaceae	Zoysia macrostachya	9	Zma_g11411, Zma_g13865, Zma_g16642, Zma_g19374, Zma_g29921 ... Zma_g30551, Zma_g32099, Zma_g32800, Zma_g8877
Portulacaceae	Portulaca oleracea	20	evm.TU.LG06.838, evm.TU.LG07.253, evm.TU.LG07.265 ... evm.TU.LG07.267, evm.TU.LG07.268, evm.TU.LG09.186, evm.TU.LG11.17, evm.TU.LG13.790, evm.TU.LG15.684, evm.TU.LG15.685, evm.TU.LG15.687, evm.TU.LG15.701, evm.TU.LG16.1541, evm.TU.LG18.670, evm.TU.LG18.671, evm.TU.LG21.465, evm.TU.LG26.122, evm.TU.LG26.355, evm.TU.LG26.356, evm.TU.LG26.357
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g27680, gene.Posoc04g22540, gene.Posoc07g10520 ... gene.Posoc08g06590
Rhizophoraceae	Bruguiera sexangula	10	evm.TU.45702.1, evm.TU.Scaffold_11_RagTag.23 ... evm.TU.Scaffold_15_RagTag.157, evm.TU.Scaffold_17_RagTag.837, evm.TU.Scaffold_2_RagTag.1284, evm.TU.Scaffold_3_RagTag.12, evm.TU.Scaffold_6_RagTag.1277, evm.TU.Scaffold_6_RagTag.2203, evm.TU.Scaffold_6_RagTag.2210, evm.TU.Scaffold_8_RagTag.1384
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-137, nbisL1-mrna-155, nbisL1-mrna-16247 ... nbisL1-mrna-16925, nbisL1-mrna-16934, nbisL1-mrna-16935, nbisL1-mrna-3929, nbisL1-mrna-3952, nbisL1-mrna-7126, nbisL1-mrna-9181
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-1019, nbisL1-mrna-1148, nbisL1-mrna-12007 ... nbisL1-mrna-17310, nbisL1-mrna-5896, nbisL1-mrna-5951, nbisL1-mrna-5956, nbisL1-mrna-9540
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-1100, nbisL1-mrna-11637, nbisL1-mrna-14524 ... nbisL1-mrna-15270, nbisL1-mrna-17488, nbisL1-mrna-18735, nbisL1-mrna-22007
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000001l.50, add.evm.TU.utg000011l.304 ... add.evm.TU.utg000013l.176, evm.TU.utg000005l.360, evm.TU.utg000009l.455, evm.TU.utg000011l.1351, evm.TU.utg000018l.199, evm.TU.utg000019l.1207
Rhizophoraceae	Kandelia obovata	7	Maker00003700, Maker00004352, Maker00005300, Maker00006809 ... Maker00007186, Maker00007591, Maker00010281
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-12358, nbisL1-mrna-15763, nbisL1-mrna-21063 ... nbisL1-mrna-21339, nbisL1-mrna-22209, nbisL1-mrna-6616, nbisL1-mrna-9542
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-14200, nbisL1-mrna-18755, nbisL1-mrna-22096 ... nbisL1-mrna-23207, nbisL1-mrna-23704, nbisL1-mrna-2501, nbisL1-mrna-2777, nbisL1-mrna-3977
Salicaceae	Populus euphratica	16	populus_peu00158, populus_peu00159, populus_peu03351 ... populus_peu03352, populus_peu07138, populus_peu09605, populus_peu11545, populus_peu11546, populus_peu14006, populus_peu17300, populus_peu17301, populus_peu21116, populus_peu24929, populus_peu25218, populus_peu33175, populus_peu34198
Solanaceae	Lycium barbarum	9	gene-LOC132606355, gene-LOC132606709, gene-LOC132618585 ... gene-LOC132619351, gene-LOC132621539, gene-LOC132622859, gene-LOC132623211, gene-LOC132628266, gene-LOC132642760
Solanaceae	Solanum chilense	6	SOLCI002698800, SOLCI003208400, SOLCI004091600 ... SOLCI004665900, SOLCI005618600, SOLCI006761200
Solanaceae	Solanum pennellii	8	gene-LOC107002671, gene-LOC107007655, gene-LOC107010262 ... gene-LOC107010281, gene-LOC107011635, gene-LOC107012173, gene-LOC107013734, gene-LOC107016131
Tamaricaceae	Reaumuria soongarica	5	STRG.10468_chr07_+, STRG.26782_chr04_-, gene_1186, gene_2316 ... gene_7448
Tamaricaceae	Tamarix chinensis	6	TC02G1729, TC04G0831, TC04G2379, TC05G1395, TC07G0928 ... TC08G0727
Zosteraceae	Zostera marina	4	Zosma01g00190.v3.1, Zosma01g00200.v3.1, Zosma03g30490.v3.1 ... Zosma05g05280.v3.1