Basic Information
Locus ID:
Cgl09G0891
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 14298185 | 14301996 | + | Cgl09G0891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 39,897.31 Da | 53.16 | 93.53 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 313 | 357 | 2.87843E-19 | - |
| Pfam | PF13639 | Ring finger domain | 313 | 355 | 5.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 359 | 3.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 359 | 6.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 314 | 354 | 8.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 355 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 169 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_041014067.1 | LOW QUALITY PROTEIN: E3 ubiquitin protein ligase RIE1-like [Juglans microcarpa x Juglans regia] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RE80 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology