Basic Information
Locus ID:
Cgl09G0831
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 13289641 | 13320017 | + | Cgl09G0831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 330,790.28 Da | 37.97 | 83.77 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 2063 | 2132 | 2.88536E-7 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 2429 | 2901 | 5.9E-140 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 1315 | 1892 | 2.4E-185 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 300 | 877 | 2.0E-186 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2060 | 2133 | 1.36E-6 | IPR035979 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_023929332.1 | probable RNA-dependent RNA polymerase 1 [Quercus suber] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A199VQA1 | RNA-directed RNA polymerase (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_00034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology