Basic Information
Locus ID:
Cgl09G0671
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 10573143 | 10575296 | - | Cgl09G0671 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 21,454.49 Da | 41.02 | 96.36 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 40 | 154 | 8.48084E-46 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 53 | 148 | 3.2E-23 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 34 | 180 | 3.17E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 32 | 184 | 7.5E-42 | IPR027417 |
| SMART | SM00490 | helicmild6 | 73 | 148 | 4.1E-22 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 39 | 184 | 16.648529 | IPR001650 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_018826866.1 | eukaryotic initiation factor 4A-3-like [Juglans regia] | 0 |
| Q9VHS8 | Eukaryotic initiation factor 4A-III OS=Drosophila melanogaster OX=7227 GN=CG7483 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A5PBT7 | RNA helicase OS=Lupinus albus OX=3870 GN=Lal_00022532 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology