Basic Information
Locus ID:
Cgl09G0429
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 6447401 | 6461198 | + | Cgl09G0429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 142,316.50 Da | 48.78 | 80.05 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 496 | 698 | 5.88356E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 699 | 830 | 4.71777E-72 | - |
| Pfam | PF09382 | RQC domain | 920 | 1037 | 2.3E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 832 | 914 | 8.9E-17 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 714 | 820 | 5.8E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 510 | 678 | 4.4E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1077 | 1144 | 3.8E-15 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 548 | 841 | 1.26E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1075 | 1145 | 4.36E-13 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 921 | 1033 | 2.45E-18 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 918 | 1039 | 9.7E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 471 | 698 | 1.1E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1069 | 1155 | 9.6E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 699 | 917 | 1.2E-63 | IPR027417 |
| SMART | SM00487 | ultradead3 | 504 | 706 | 5.9E-30 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1072 | 1154 | 2.3E-4 | IPR002121 |
| SMART | SM00490 | helicmild6 | 740 | 821 | 2.0E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 923 | 1034 | 1.2E-30 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 500 | 974 | 1.8E-162 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 730 | 772 | 8.877661 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 516 | 691 | 22.272808 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1072 | 1154 | 17.753111 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 715 | 858 | 19.417076 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 630 | 639 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1156 | 1190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 407 | - | - |
| Coils | Coil | Coil | 364 | 384 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_042982000.1 | ATP-dependent DNA helicase Q-like 4A [Carya illinoinensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4R7K8 | DNA helicase OS=Castanea mollissima OX=60419 GN=CMV_016094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology