Basic Information
Locus ID:
Cgl08G2355
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 26442947 | 26448157 | + | Cgl08G2355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 72,950.47 Da | 50.33 | 92.52 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 5.53892E-28 | - |
| Pfam | PF04564 | U-box domain | 258 | 328 | 3.2E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 2.3E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 1.7E-9 | IPR000225 |
| Pfam | PF05536 | Neurochondrin | 520 | 647 | 2.1E-5 | IPR008709 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 636 | 1.87E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 334 | 1.03E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 667 | 6.9E-59 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 331 | 5.6E-32 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 118 | 3.9E-13 | IPR036537 |
| SMART | SM00185 | arm_5 | 590 | 630 | 51.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 9.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 36.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.9E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.0073 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 3.0E-36 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 11.5324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 555 | 8.9074 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 45.857876 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 672 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_017983440.1 | PREDICTED: U-box domain-containing protein 13 [Theobroma cacao] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KXK4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_011487 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology