Basic Information
Locus ID:
Cgl08G2354
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 26430824 | 26438585 | + | Cgl08G2354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 29,117.05 Da | 52.51 | 88.89 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 184 | 226 | 3.05753E-22 | - |
| Pfam | PF04564 | U-box domain | 180 | 250 | 8.0E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 252 | 1.5E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 180 | 252 | 1.3E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 183 | 246 | 4.9E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 179 | 253 | 33.040455 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_018823269.1 | U-box domain-containing protein 13-like isoform X1 [Juglans regia] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KXK4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_011487 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology