Basic Information
Locus ID:
Cgl08G2211
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 25035304 | 25036407 | + | Cgl08G2211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 40,266.42 Da | 86.21 | 57.49 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 184 | 225 | 5.30677E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 1.6E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 183 | 225 | 2.0E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 243 | 339 | 3.6E-35 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 231 | 7.95E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 231 | 6.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 224 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 225 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_042957086.1 | E3 ubiquitin-protein ligase RDUF2-like [Carya illinoinensis] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KUN4 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_011531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology