Basic Information
Locus ID:
Cgl08G1788
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 20679168 | 20684062 | - | Cgl08G1788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 61,298.13 Da | 39.90 | 76.95 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 251 | 539 | 8.79E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 421 | 546 | 1.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 242 | 411 | 4.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 331 | 368 | 86.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 449 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 9.7 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 83 | 109 | 11.99514 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 434 | 458 | 8.503359 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967528.1 | zinc finger CCCH domain-containing protein 17-like isoform X2 [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3N8 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology