Basic Information
Locus ID:
Cgl08G1770
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 20462063 | 20467854 | + | Cgl08G1770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 52,015.91 Da | 35.04 | 96.61 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 297 | 431 | 3.5E-18 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 46 | 178 | 3.6E-15 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 291 | 432 | 1.31E-24 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 30 | 179 | 2.75E-22 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 264 | 431 | 1.3E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 14 | 178 | 1.1E-14 | IPR036378 |
| SMART | SM00554 | fasc_3 | 326 | 432 | 2.6E-16 | IPR000782 |
| SMART | SM00554 | fasc_3 | 75 | 179 | 1.2E-12 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 285 | 429 | 17.406048 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 34 | 176 | 16.212465 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60490.1 | FASCICLIN-like arabinogalactan-protein 12. | 0 |
| RefSeq | XP_040990862.1 | fasciclin-like arabinogalactan protein 12 [Juglans microcarpa x Juglans regia] | 0 |
| Q8LEE9 | Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A1WM99 | Fasciclin-like arabinogalactan protein 12 OS=Morella rubra OX=262757 GN=CJ030_MR1G014152 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology