Basic Information
Locus ID:
Cgl08G1759
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 20340901 | 20349176 | - | Cgl08G1759 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 39,447.02 Da | 55.77 | 68.51 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 298 | 339 | 4.82691E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 297 | 344 | 1.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 345 | 2.14E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 349 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 299 | 338 | 1.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 299 | 339 | 11.545086 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030453083.1 | probable E3 ubiquitin-protein ligase LOG2 isoform X2 [Syzygium oleosum] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A660KU03 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_011328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology