Basic Information
Locus ID:
Cgl08G1690
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 19217159 | 19221980 | + | Cgl08G1690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 61,044.61 Da | 46.36 | 80.11 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 365 | 400 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 405 | 439 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 4.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 240 | 541 | 4.4E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 298 | 549 | 1.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 293 | 1.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.3E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 73 | 97 | 0.0019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 318 | 355 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 440 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 400 | 6.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 496 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 14.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 370 | 400 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 370 | 409 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 278 | 10.759232 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 72 | 98 | 12.849548 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 442 | 8.904377 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 427 | 441 | 9.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 9.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 387 | 401 | 9.3E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.2 | - | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology