Basic Information
Locus ID:
Cgl08G1683
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 19130618 | 19135929 | + | Cgl08G1683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 55,360.21 Da | 48.71 | 78.66 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 228 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 355 | 389 | 0.0081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 350 | 1.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 189 | 490 | 1.47E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 166 | 263 | 1.9E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 264 | 497 | 1.4E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 313 | 350 | 6.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 487 | 11.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 6.9E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 404 | 445 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 305 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 390 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 189 | 228 | 1.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 196 | 228 | 10.759232 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 13.206334 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 320 | 350 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 394 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 237 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 359 | 11.978851 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 337 | 351 | 7.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 377 | 391 | 7.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 215 | 229 | 7.1E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology