Basic Information
Locus ID:
Cgl08G1656
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 18757181 | 18762291 | - | Cgl08G1656 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 54,851.75 Da | 46.52 | 76.95 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 351 | 2.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 229 | 3.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 390 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 190 | 487 | 1.24E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 176 | 246 | 6.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 247 | 487 | 2.6E-31 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.0019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 398 | 442 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 391 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 229 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 351 | 6.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 306 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 484 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 12.849548 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 197 | 229 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 351 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 238 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 400 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 360 | 12.17936 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 216 | 230 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 378 | 392 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 180 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology