Basic Information
Locus ID:
Cgl08G1632
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Retinoblastoma-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 18449339 | 18459127 | + | Cgl08G1632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 60,849.71 Da | 38.89 | 84.81 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 70 | 95 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 22 | 51 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 243 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 363 | 3.05E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 136 | 423 | 1.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 22 | 127 | 2.2E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 325 | 364 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 95 | 0.0076 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 323 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 51 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.36 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 244 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 104 | 10.441614 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 38 | 52 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 555 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_018855580.1 | protein RBL isoform X1 [Juglans regia] | 0 |
| Q5E915 | Protein RBL OS=Arabidopsis thaliana OX=3702 GN=RBL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4HHE9 | protein RBL isoform X1 OS=Juglans regia OX=51240 GN=LOC109017847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1485 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21853 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028578 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26778, Sbi_jg33788 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8480 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011718 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73635, Sgl77099 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004794, gene:ENSEOMG00000037726 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007870, CQ.Regalona.r1.9BG0008140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169010 |
| Apiaceae | Apium graveolens | 2 | Ag1G01052, Ag9G01501 |
| Arecaceae | Cocos nucifera | 4 | COCNU_05G002670, COCNU_05G002700, COCNU_05G002730 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705260, gene-LOC103707770, gene-LOC120103678 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2102.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G22646, Ftri18G02646 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020461m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042670.2N, BniB07g050150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1632 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0049s00035.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014724 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13655, Lb4G24185 |
| Poaceae | Echinochloa crus-galli | 10 | AH01.4579, AH05.3261, BH01.2536, BH03.151, BH03.152 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0238140, gene-QOZ80_3BG0289880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070021 |
| Poaceae | Oryza coarctata | 2 | Oco05G006050, Oco06G006200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G437600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101619, Pt_Chr0404877 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G001660, Chr07G009610, Chr20G007920 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G432000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006950, gene_TRIDC4BG044160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G050200.1, TraesCS4B02G254400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb007220_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2533, nbis-gene-4110, nbis-gene-54605 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1821, Zma_g4180 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1907, evm.TU.LG08.945, evm.TU.LG09.43 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g08670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1402 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16816 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4638 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1205 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.892 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13408 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3870 |
| Salicaceae | Populus euphratica | 4 | populus_peu01482, populus_peu01503, populus_peu19619 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645323 |
| Solanaceae | Solanum chilense | 1 | SOLCI004726200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004954 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11398, gene_8361 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0061, TC12G0687 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01470.v3.1 |