Basic Information
Locus ID:
Cgl08G1556
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 17214616 | 17219613 | - | Cgl08G1556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 109,171.54 Da | 33.15 | 82.84 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 108 | 138 | 1.2E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 347 | 372 | 1.6E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 173 | 202 | 2.1E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 204 | 232 | 1.9E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 316 | 344 | 5.0E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 507 | 555 | 5.2E-11 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 575 | 606 | 5.5E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 481 | 504 | 0.086 | IPR002885 |
| Pfam | PF01657 | Salt stress response/antifungal | 856 | 949 | 1.8E-13 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 743 | 836 | 4.9E-21 | IPR002902 |
| Pfam | PF13041 | PPR repeat family | 406 | 450 | 5.5E-10 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 274 | 296 | 2.8E-6 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 269 | 434 | 1.31E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 173 | 5.0E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 233 | 359 | 1.8E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 360 | 457 | 5.2E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 458 | 568 | 1.1E-25 | IPR011990 |
| Gene3D | G3DSA:3.30.430.20 | - | 845 | 951 | 2.3E-24 | IPR038408 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 569 | 640 | 1.6E-7 | IPR011990 |
| Gene3D | G3DSA:3.30.430.20 | - | 738 | 839 | 1.0E-27 | IPR038408 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 510 | 543 | 4.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 583 | 607 | 6.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 204 | 232 | 0.0018 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 347 | 372 | 1.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 173 | 204 | 8.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 316 | 345 | 3.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 273 | 297 | 2.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 108 | 139 | 5.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 379 | 408 | 7.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 409 | 442 | 6.2E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 171 | 205 | 12.74805 | IPR002885 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 845 | 951 | 19.530357 | IPR002902 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 314 | 348 | 10.402331 | IPR002885 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 736 | 839 | 22.209778 | IPR002902 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 376 | 410 | 11.005202 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 270 | 300 | 9.448698 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 106 | 140 | 11.816339 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 508 | 542 | 12.484979 | IPR002885 |
| Coils | Coil | Coil | 860 | 880 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62260.1 | mitochondrial editing factor 9. Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing. | 0 |
| RefSeq | XP_035541411.1 | pentatricopeptide repeat-containing protein At1g62260, mitochondrial [Juglans regia] | 0 |
| O04590 | Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RUQ0 | Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Carpinus fangiana OX=176857 GN=FH972_019772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology