Basic Information
Locus ID:
Cgl08G1531
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 16813932 | 16819018 | - | Cgl08G1531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 60,670.22 Da | 44.54 | 79.65 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 409 | 5.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 287 | 3.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 448 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 249 | 540 | 7.33E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 232 | 333 | 9.3E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 334 | 547 | 2.5E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 327 | 364 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 409 | 5.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 449 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 495 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 2.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 296 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 287 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 418 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 409 | 8.57106 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.769801 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 419 | 458 | 9.271977 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 436 | 450 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 396 | 410 | 6.2E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_023896327.1 | zinc finger CCCH domain-containing protein 48-like [Quercus suber] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology