Basic Information
Locus ID:
Cgl08G1340
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 13088555 | 13093635 | - | Cgl08G1340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 56,243.38 Da | 65.89 | 84.04 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 262 | 310 | 4.89642E-16 | - |
| Pfam | PF12906 | RING-variant domain | 262 | 309 | 1.4E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 313 | 3.61E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 314 | 9.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 261 | 310 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 254 | 316 | 19.663385 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 183 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042943133.1 | uncharacterized protein LOC122277260 [Carya illinoinensis] | 0 |
| TrEMBL | A0A8T1PMI0 | RING-CH-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_09G177200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology