Basic Information
Locus ID:
Cgl08G1249
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
AFC1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 12141003 | 12148047 | + | Cgl08G1249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 115,164.86 Da | 47.25 | 84.61 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14134 | PKc_CLK | 660 | 1001 | 0.0 | - |
| Pfam | PF01535 | PPR repeat | 74 | 104 | 0.19 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 304 | 348 | 3.2E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 203 | 249 | 7.3E-10 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 173 | 200 | 1.8E-6 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 673 | 1001 | 8.2E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 660 | 1005 | 2.29E-76 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 130 | 257 | 1.3E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 48 | 129 | 4.2E-9 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 660 | 753 | 4.4E-111 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 260 | 360 | 1.8E-22 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 727 | 1001 | 4.4E-111 | - |
| SMART | SM00220 | serkin_6 | 673 | 1001 | 9.1E-73 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 206 | 239 | 1.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 76 | 108 | 7.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 175 | 204 | 8.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 307 | 341 | 1.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 279 | 307 | 1.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | 8.527949 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 72 | 106 | 9.613118 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 305 | 339 | 12.167101 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 204 | 238 | 12.112294 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 173 | 203 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 274 | 304 | 8.725252 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 673 | 1001 | 38.124359 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 794 | 806 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53570.3 | FUS3-complementing gene 1. a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast. | 0 |
| RefSeq | XP_017977203.1 | PREDICTED: serine/threonine-protein kinase AFC1 isoform X1 [Theobroma cacao] | 0 |
| P51566 | Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana OX=3702 GN=AFC1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1R3JQI8 | Protein kinase domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_14875 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3406 |
| Apiaceae | Apium graveolens | 1 | Ag4G01570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705936 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.181.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G10384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003325m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g035470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1223 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1249 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1302 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003320, Pov_00013156, Pov_00013157 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.3832, BH07.4142 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0039320, gene-QOZ80_1BG0089340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0302930.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056250 |
| Poaceae | Oryza coarctata | 2 | Oco01G024490, Oco02G025360 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g62220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G330400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G005130, Chr05G028260 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G572300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG051410, gene_TRIDC3BG057980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G357300.1.cds1, TraesCS3B02G389900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb148530_P001 |
| Salicaceae | Populus euphratica | 1 | populus_peu12508 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630212 |
| Solanaceae | Solanum chilense | 1 | SOLCI006210600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029839 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12260.v3.1 |