Basic Information
Locus ID:
Cgl08G1228
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 11967955 | 11976493 | + | Cgl08G1228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.41 | 97,804.15 Da | 39.74 | 79.55 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 455 | 504 | 8.2E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 250 | 305 | 1.5E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 754 | 846 | 2.71E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 599 | 654 | 3.29E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 517 | 568 | 1.09E-14 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 698 | 866 | 3.0E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 510 | 576 | 1.4E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 599 | 659 | 7.9E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 521 | 562 | 1.3E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 600 | 657 | 8.5E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 519 | 564 | 10.228701 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 709 | 859 | 9.415755 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 598 | 659 | 8.519899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 522 | 561 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 601 | 656 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_035544358.1 | uncharacterized protein LOC108981020 isoform X2 [Juglans regia] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RK84 | Increased DNA methylation 1 OS=Carpinus fangiana OX=176857 GN=FH972_017425 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology