Basic Information
Locus ID:
Cgl08G1195
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 11624919 | 11628706 | + | Cgl08G1195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 101,453.63 Da | 56.14 | 70.34 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 426 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 720 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 587 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 545 | 1.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 390 | 724 | 8.35E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 493 | 758 | 1.4E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 350 | 469 | 3.1E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 680 | 721 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 628 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 545 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 427 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 548 | 587 | 6.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 679 | 5.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 700 | 720 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 514 | 547 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 554 | 588 | 10.205597 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 395 | 429 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 514 | 554 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 436 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 554 | 596 | 12.279615 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 414 | 428 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 532 | 546 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 532 | 546 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 574 | 588 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 414 | 428 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 801 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_035544515.1 | WD repeat-containing protein 44-like [Juglans regia] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RM79 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology