Basic Information
Locus ID:
Cgl08G1056
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 10245841 | 10253785 | + | Cgl08G1056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 99,273.70 Da | 55.35 | 90.31 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 728 | 778 | 5.4E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 730 | 779 | 4.96E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 378 | 1.92E-16 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 402 | 3.2E-23 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 722 | 789 | 1.7E-8 | - |
| SMART | SM00577 | forpap2 | 210 | 356 | 2.2E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 717 | 779 | 4.1E-4 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 399 | 11.473944 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 743 | 780 | 12.280972 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 862 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_018825887.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Juglans regia] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2I4F2L2 | protein-serine/threonine phosphatase OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology