halophFGD

Basic Information

Locus ID: Cgl08G0962

Species & Taxonomic ID: Casuarina glauca & 3522

Genome Assembly: GCA_028551395.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr08	9425355	9429365	+	Cgl08G0962

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.11	72,393.00 Da	39.06	106.87	0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	533	556	0.45	IPR001611
Pfam	PF13516	Leucine Rich repeat	559	581	0.48	IPR001611
Pfam	PF13516	Leucine Rich repeat	331	351	0.24	IPR001611
Pfam	PF13516	Leucine Rich repeat	459	479	0.31	IPR001611
Pfam	PF13516	Leucine Rich repeat	177	197	1.4	IPR001611
Pfam	PF13516	Leucine Rich repeat	253	274	0.011	IPR001611
Pfam	PF13516	Leucine Rich repeat	408	428	4.4E-4	IPR001611
SUPERFAMILY	SSF81383	F-box domain	4	56	6.76E-5	IPR036047
SUPERFAMILY	SSF52047	RNI-like	403	620	5.49E-34	-
SUPERFAMILY	SSF52047	RNI-like	65	392	1.6E-41	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	399	651	3.2E-47	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	16	267	8.5E-40	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	293	398	1.5E-18	IPR032675
SMART	SM00367	LRR_CC_2	228	252	420.0	IPR006553
SMART	SM00367	LRR_CC_2	126	151	55.0	IPR006553
SMART	SM00367	LRR_CC_2	73	98	190.0	IPR006553
SMART	SM00367	LRR_CC_2	203	227	39.0	IPR006553
SMART	SM00367	LRR_CC_2	533	558	0.0036	IPR006553
SMART	SM00367	LRR_CC_2	430	455	0.0039	IPR006553
SMART	SM00367	LRR_CC_2	177	202	0.0057	IPR006553
SMART	SM00367	LRR_CC_2	329	354	5.9E-4	IPR006553
SMART	SM00367	LRR_CC_2	456	481	3.7E-5	IPR006553
SMART	SM00367	LRR_CC_2	304	328	30.0	IPR006553
SMART	SM00367	LRR_CC_2	152	176	42.0	IPR006553
SMART	SM00367	LRR_CC_2	355	380	0.0084	IPR006553
SMART	SM00367	LRR_CC_2	381	406	36.0	IPR006553
SMART	SM00367	LRR_CC_2	253	278	1.8E-4	IPR006553
SMART	SM00367	LRR_CC_2	559	583	13.0	IPR006553
SMART	SM00367	LRR_CC_2	100	125	10.0	IPR006553
SMART	SM00367	LRR_CC_2	482	507	0.011	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G01720.1	RNI-like superfamily protein.
RefSeq	XP_042942998.1	F-box/LRR-repeat protein 3 isoform X1 [Carya illinoinensis]
Swiss-Prot	Q8RWU5	F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana OX=3702 GN=FBL3 PE=2 SV=1
TrEMBL	A0A6A1WI47	F-box/LRR-repeat protein 3 OS=Morella rubra OX=262757 GN=CJ030_MR2G016402 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1418, jg16690, jg21205, jg3211
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14544, gene_5979
Amaranthaceae	Atriplex hortensis	2	Ah005710, Ah031358
Amaranthaceae	Beta vulgaris	2	BVRB_7g158000, BVRB_7g175510
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2264, Sbi_jg26871, Sbi_jg33702, Sbi_jg33703 ... Sbi_jg34233
Amaranthaceae	Salicornia europaea	2	Seu_jg2491, Seu_jg8392
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003029, GOSA_00005995, GOSA_00015377
Amaranthaceae	Suaeda glauca	7	Sgl24439, Sgl29614, Sgl70996, Sgl73103, Sgl74546, Sgl74587 ... Sgl76652
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006019, gene:ENSEOMG00000007524 ... gene:ENSEOMG00000036028, gene:ENSEOMG00000036471, gene:ENSEOMG00000039346, gene:ENSEOMG00000039501, gene:ENSEOMG00000040307, gene:ENSEOMG00000042395
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0010670, CQ.Regalona.r1.2BG0010680 ... CQ.Regalona.r1.4BG0007950, CQ.Regalona.r1.7AG0001420, CQ.Regalona.r1.7AG0021980, CQ.Regalona.r1.7BG0024540
Anacardiaceae	Pistacia vera	1	pistato.v30268050
Apiaceae	Apium graveolens	3	Ag10G00968, Ag2G01147, Ag7G01578
Arecaceae	Cocos nucifera	3	COCNU_01G002030, COCNU_04G003940, COCNU_12G002630
Arecaceae	Phoenix dactylifera	1	gene-LOC103719773
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2146.V1.1, AsparagusV1_Unassigned.77.V1.1
Asteraceae	Flaveria trinervia	1	Ftri4G31147
Brassicaceae	Arabidopsis thaliana	2	AT5G01720.1, AT5G27920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003812m.g.v1.0, Thhalv10012898m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21020.v2.2, Sp6g40980.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078910.2N, BniB05g066790.2N, BniB07g038770.2N ... BniB08g000130.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1150, Ceq08G0943, Ceq08G1797
Casuarinaceae	Casuarina glauca	3	Cgl06G1200, Cgl08G0962, Cgl08G1858
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g01680, gene.Cymno18g01150
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g02460, gene.Thate02g08970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8246
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.930, evm.TU.LG03.2495
Plantaginaceae	Plantago ovata	2	Pov_00006957, Pov_00007221
Plumbaginaceae	Limonium bicolor	1	Lb1G06640
Poaceae	Echinochloa crus-galli	11	AH04.2116, AH04.44, AH05.3708, AH05.66, BH04.2199, BH04.53 ... BH05.3746, CH04.169, CH04.2535, CH05.20, CH05.3938
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_5AG0378810, gene-QOZ80_5AG0393420 ... gene-QOZ80_5BG0425920, gene-QOZ80_5BG0441650, gene-QOZ80_9AG0672190, gene-QOZ80_9AG0691710, gene-QOZ80_9BG0695730, gene-QOZ80_9BG0718000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0444540.1, HORVU.MOREX.r3.5HG0465190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_001914, gene-QYE76_003718
Poaceae	Oryza coarctata	3	Oco23G008100, Oco24G007700, Ocoptg000061lG000380
Poaceae	Oryza sativa	3	LOC_Os11g01780.1, LOC_Os12g01760.1, LOC_Os12g36670.1
Poaceae	Paspalum vaginatum	4	gene-BS78_05G007700, gene-BS78_05G231300 ... gene-BS78_08G002500, gene-BS78_08G093600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0204318, Pt_Chr0702857, Pt_Chr0703813, Pt_Chr0705238
Poaceae	Sporobolus alterniflorus	12	Chr03G008220, Chr03G022770, Chr04G016790, Chr06G017460 ... Chr07G014590, Chr16G008150, Chr17G007220, Chr19G009500, Chr19G011480, Chr27G004660, Chr27G006950, Chr31G008050
Poaceae	Thinopyrum elongatum	2	Tel5E01G180000, Tel5E01G261200
Poaceae	Triticum dicoccoides	7	gene_TRIDC2BG022870, gene_TRIDC4BG003160 ... gene_TRIDC5AG014220, gene_TRIDC5AG025200, gene_TRIDC5BG016190, gene_TRIDC5BG026390, gene_TRIDC7BG003710
Poaceae	Triticum aestivum	6	TraesCS5A02G091800.2, TraesCS5A02G150800.2 ... TraesCS5B02G097800.2, TraesCS5B02G149400.1, TraesCS5D02G103900.3, TraesCS5D02G155900.1
Poaceae	Zea mays	7	Zm00001eb068870_P001, Zm00001eb094050_P001 ... Zm00001eb137200_P001, Zm00001eb163310_P002, Zm00001eb165480_P001, Zm00001eb261850_P001, Zm00001eb410120_P003
Poaceae	Zoysia japonica	4	nbis-gene-25830, nbis-gene-30302, nbis-gene-46015 ... nbis-gene-50006
Poaceae	Zoysia macrostachya	4	Zma_g19121, Zma_g24607, Zma_g25171, Zma_g25953
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.1167, evm.TU.LG01.500, evm.TU.LG03.1134 ... evm.TU.LG04.1039, evm.TU.LG06.579, evm.TU.LG07.931, evm.TU.LG08.705, evm.TU.LG15.839, evm.TU.LG16.1642, evm.TU.LG19.944, evm.TU.LG22.1315, evm.TU.LG23.394, evm.TU.LG26.22
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g09140, gene.Posoc07g11900
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1880, evm.TU.Scaffold_1_RagTag.94 ... evm.TU.Scaffold_2_RagTag.571
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-4628, nbisL1-mrna-5643, nbisL1-mrna-8182
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-2107, nbisL1-mrna-5156
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3650, nbisL1-mrna-5179, nbisL1-mrna-9623
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.982, evm.TU.utg000012l.68 ... evm.TU.utg000016l.739
Rhizophoraceae	Kandelia obovata	3	Maker00006080, Maker00011035, Maker00016912
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2651, nbisL1-mrna-4914, nbisL1-mrna-7890
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13814, nbisL1-mrna-16652, nbisL1-mrna-84
Salicaceae	Populus euphratica	6	populus_peu11481, populus_peu13333, populus_peu15661 ... populus_peu16980, populus_peu18603, populus_peu25348
Solanaceae	Lycium barbarum	2	gene-LOC132606760, gene-LOC132645993
Solanaceae	Solanum chilense	2	SOLCI000857800, SOLCI004699000
Solanaceae	Solanum pennellii	2	gene-LOC107007469, gene-LOC107032076
Tamaricaceae	Reaumuria soongarica	3	gene_18136, gene_5713, gene_6639
Tamaricaceae	Tamarix chinensis	3	TC02G0853, TC02G2398, TC07G1061
Zosteraceae	Zostera marina	1	Zosma01g17700.v3.1