Basic Information
Locus ID:
Cgl08G0289
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
CCT3
Description:
T-complex protein 1 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 2457704 | 2461223 | + | Cgl08G0289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 64,293.31 Da | 37.45 | 84.72 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 264 | 297 | 1.09752E-9 | - |
| CDD | cd00054 | EGF_CA | 222 | 254 | 0.00313252 | - |
| Pfam | PF12947 | EGF domain | 273 | 299 | 2.0E-8 | IPR024731 |
| Pfam | PF00069 | Protein kinase domain | 414 | 577 | 1.7E-35 | IPR000719 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 261 | 299 | 4.19E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 578 | 7.42E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 582 | 3.1E-25 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 266 | 301 | 1.2E-9 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 219 | 265 | 4.7E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 487 | 2.4E-32 | - |
| SMART | SM00181 | egf_5 | 267 | 305 | 0.024 | IPR000742 |
| SMART | SM00181 | egf_5 | 221 | 263 | 0.031 | IPR000742 |
| SMART | SM00220 | serkin_6 | 412 | 582 | 5.4E-11 | IPR000719 |
| SMART | SM00179 | egfca_6 | 222 | 263 | 0.47 | IPR001881 |
| SMART | SM00179 | egfca_6 | 264 | 305 | 7.8E-9 | IPR001881 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 218 | 263 | 11.095993 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 264 | 297 | 16.180374 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 582 | 30.506132 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 418 | 441 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 264 | 288 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 530 | 542 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 279 | 290 | - | IPR000152 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_035546550.1 | wall-associated receptor kinase 2-like [Juglans regia] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RMD8 | Protein kinase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0329, Ceq08G0334 |
| Casuarinaceae | Casuarina glauca | 16 | Cgl02G2034, Cgl08G0268, Cgl08G0269, Cgl08G0271, Cgl08G0274 ... |