Basic Information
Locus ID:
Cgl08G0282
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
CCT3
Description:
T-complex protein 1 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 2369882 | 2373212 | - | Cgl08G0282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 63,743.18 Da | 38.65 | 87.96 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 80 | 112 | 0.00200187 | - |
| CDD | cd14066 | STKc_IRAK | 254 | 516 | 3.41811E-93 | - |
| CDD | cd00054 | EGF_CA | 122 | 157 | 7.6642E-8 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 122 | 160 | 3.1E-8 | IPR001881 |
| Pfam | PF00069 | Protein kinase domain | 250 | 511 | 4.2E-53 | IPR000719 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 121 | 157 | 3.85E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 232 | 513 | 7.28E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 324 | 542 | 3.0E-56 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 125 | 165 | 3.5E-9 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 77 | 124 | 5.9E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 216 | 323 | 9.0E-31 | - |
| SMART | SM00181 | egf_5 | 79 | 121 | 0.87 | IPR000742 |
| SMART | SM00179 | egfca_6 | 122 | 165 | 6.3E-7 | IPR001881 |
| SMART | SM00181 | egf_5 | 125 | 165 | 0.055 | IPR000742 |
| SMART | SM00220 | serkin_6 | 248 | 518 | 6.5E-42 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 76 | 121 | 9.477692 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 122 | 165 | 12.252946 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 248 | 518 | 38.760387 | IPR000719 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 139 | 150 | - | IPR000152 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 366 | 378 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 254 | 276 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 122 | 148 | - | IPR018097 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21270.1 | wall-associated kinase 2. cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. | 0 |
| RefSeq | XP_030962949.1 | wall-associated receptor kinase 2-like [Quercus lobata] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4VF38 | Wall-associated receptor kinase 2-like OS=Castanea mollissima OX=60419 GN=CMV_026490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0329, Ceq08G0334 |
| Casuarinaceae | Casuarina glauca | 16 | Cgl02G2034, Cgl08G0268, Cgl08G0269, Cgl08G0271, Cgl08G0274 ... |