Basic Information
Locus ID:
Cgl08G0271
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
CCT3
Description:
T-complex protein 1 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 2314194 | 2317418 | - | Cgl08G0271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 64,551.01 Da | 34.17 | 88.11 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 290 | 554 | 3.43985E-93 | - |
| CDD | cd00054 | EGF_CA | 118 | 148 | 0.00841465 | - |
| CDD | cd00054 | EGF_CA | 158 | 193 | 5.78558E-11 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 15 | 65 | 1.7E-7 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 286 | 548 | 1.6E-56 | IPR000719 |
| Pfam | PF07645 | Calcium-binding EGF domain | 158 | 197 | 6.7E-10 | IPR001881 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 157 | 193 | 1.9E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 267 | 553 | 9.17E-80 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 158 | 197 | 6.1E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 253 | 359 | 6.6E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 360 | 569 | 4.1E-59 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 115 | 157 | 4.2E-6 | - |
| SMART | SM00181 | egf_5 | 161 | 201 | 2.7E-4 | IPR000742 |
| SMART | SM00220 | serkin_6 | 284 | 554 | 4.7E-45 | IPR000719 |
| SMART | SM00179 | egfca_6 | 158 | 201 | 1.3E-9 | IPR001881 |
| SMART | SM00181 | egf_5 | 115 | 157 | 0.7 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 112 | 157 | 10.027483 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 284 | 554 | 40.979427 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 158 | 193 | 15.903087 | IPR000742 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 158 | 184 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 402 | 414 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 175 | 186 | - | IPR000152 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21270.1 | wall-associated kinase 2. cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. | 0 |
| RefSeq | XP_050247984.1 | putative wall-associated receptor kinase-like 16 [Quercus robur] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9HQF9 | Wall-associated receptor kinase 2-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0329, Ceq08G0334 |
| Casuarinaceae | Casuarina glauca | 16 | Cgl02G2034, Cgl08G0268, Cgl08G0269, Cgl08G0271, Cgl08G0274 ... |