Basic Information
Locus ID:
Cgl08G0066
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
AFB3
Description:
Protein AUXIN SIGNALING F-BOX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 445019 | 447602 | + | Cgl08G0066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 64,027.29 Da | 39.71 | 103.76 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 1.7E-16 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 103 | 6.9E-10 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 357 | 528 | 1.92E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 20 | 396 | 1.22E-25 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 5.2E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 573 | 3.2E-146 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 363 | 387 | 4.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 174 | 200 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 423 | 446 | 330.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 120 | 145 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 496 | 80.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 330 | 362 | 700.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_041003691.1 | protein AUXIN SIGNALING F-BOX 2 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QXJ2 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology