Basic Information
Locus ID:
Cgl08G0065
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Short Name:
AFB3
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 444031 | 444838 | + | Cgl08G0065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 20,825.36 Da | 34.07 | 104.55 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 8.0E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 81 | 9.0E-8 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 47 | 155 | 4.45E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 56 | 5.23E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 154 | 2.5E-24 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.0E-15 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 3.7E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010528142.1 | PREDICTED: protein AUXIN SIGNALING F-BOX 2 [Tarenaya hassleriana] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498J0G7 | F-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_031556 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | contig69197041G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0065 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4813 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00013444, Pov_00013446, Pov_00013447, Pov_00013448 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7847 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.1176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15999 |