Basic Information
Locus ID:
Cgl07G2526
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
F-box family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 29421404 | 29426197 | + | Cgl07G2526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 96,479.56 Da | 41.26 | 85.65 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 1.9E-10 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 217 | 311 | 2.2E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 59 | 2.62E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 41 | 6.9E-10 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 2.2E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 108 | 328 | 3.8E-27 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 50 | 10.212818 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_050274192.1 | uncharacterized protein LOC126717060 isoform X5 [Quercus robur] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QVY8 | PX domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006579 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2728 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G2526, Cgl07G2546 |