Basic Information
Locus ID:
Cgl07G2385
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 27141962 | 27148033 | - | Cgl07G2385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 81,618.69 Da | 50.51 | 63.88 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 617 | 711 | 9.2E-33 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 444 | 471 | 3.9E-4 | IPR002885 |
| Pfam | PF04749 | PLAC8 family | 44 | 117 | 4.3E-13 | IPR006461 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 350 | 586 | 6.5E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 444 | 476 | 8.1E-4 | IPR002885 |
| TIGRFAM | TIGR01571 | A_thal_Cys_rich: uncharacterized Cys-rich domain | 58 | 120 | 6.0E-16 | IPR006461 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 441 | 475 | 11.016164 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 230 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_040999393.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QNU9 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_004514 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology