Basic Information
Locus ID:
Cgl07G2181
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 24930431 | 24932260 | + | Cgl07G2181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 53,046.56 Da | 40.77 | 101.01 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 47 | 1.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 52 | 2.09E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 59 | 1.0E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 90 | 438 | 3.8E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 16 | 56 | 8.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 46 | 10.398279 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58980.1 | F-box family protein. | 0 |
| RefSeq | XP_030941807.1 | uncharacterized protein LOC115966789 [Quercus lobata] | 0 |
| P0C2G1 | F-box/LRR-repeat protein At3g58980 OS=Arabidopsis thaliana OX=3702 GN=At3g58980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QP92 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2233, Ceq07G1992 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G2490, Cgl01G2516, Cgl01G2517, Cgl07G2181 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11911 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9044 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7920 |
| Salicaceae | Populus euphratica | 5 | populus_peu09581, populus_peu12799, populus_peu12841 ... |